Plotting MODFLOW listing file budgets

This notebook shows how to

  • make stacked bar chart summaries of MODFLOW water budgets by stress period, including global budgets and budgets for advanced stress packages (SFR, Lake, etc).

  • make stacked bar charts of net fluxes for each variable

  • plot time series of individual terms (e.g. model packages, or advanced stress package variables)

[1]:

from pathlib import Path
from mfexport.listfile import plot_list_budget, get_listfile_data, plot_budget_summary, plot_budget_term
import matplotlib.pyplot as plt
%matplotlib inline

Example MODFLOW-NWT model with monthly stress periods

[2]:

listfile = Path('data/lpr/lpr_inset.list')
model_name = listfile.stem
model_start_date='2010-12-31'

output_path = 'output'

Example MODFLOW 6 model with biannual stress periods

[3]:

mf6_listfile = Path('../mfexport/tests/data/shellmound/shellmound.list')
mf6_model_name = listfile.stem
mf6_model_start_date='1998-04-01'

output_path = 'output'

Parse the listing file budget to a dataframe

  • no budgetkey argument returns the global mass balance

  • alternatively, use an identifying budgetkey (text string from the listing file) to get the terms for an advanced stress package

[4]:

df = get_listfile_data(listfile=listfile, model_start_datetime=model_start_date)
df.head()

[4]:
STORAGE_IN CONSTANT_HEAD_IN WELLS_IN RECHARGE_IN STREAM_LEAKAGE_IN TOTAL_IN STORAGE_OUT CONSTANT_HEAD_OUT WELLS_OUT RECHARGE_OUT STREAM_LEAKAGE_OUT TOTAL_OUT IN-OUT PERCENT_DISCREPANCY kstp kper
2011-01-31 426492.593750 6.469874e+05 0.0 4.471989e+02 555.530518 1074482.750 0.000000e+00 394497.15625 81550.476562 0.0 598601.3750 1074649.000 -166.250 -0.02 4 0
2011-02-28 483469.062500 6.166172e+05 0.0 4.410000e+02 1439.527466 1101966.750 0.000000e+00 502048.40625 71357.640625 0.0 528673.3125 1102079.375 -112.625 -0.01 4 1
2011-03-31 198845.421875 6.208312e+05 0.0 2.617255e+05 1598.823853 1083001.125 1.075373e+03 494819.87500 73988.679688 0.0 513919.3125 1083803.250 -802.125 -0.07 4 2
2011-04-30 13266.375977 6.350020e+05 0.0 7.910498e+05 669.892212 1439988.000 4.185641e+05 384565.34375 69679.789062 0.0 567054.6250 1439863.750 124.250 0.01 4 3
2011-05-31 0.000000 1.154976e+06 0.0 2.851267e+06 0.000000 4006243.000 2.526834e+06 307455.37500 303679.531250 0.0 868731.3750 4006700.500 -457.500 -0.01 4 4 
[5]:

mf6_df = get_listfile_data(listfile=mf6_listfile, model_start_datetime=mf6_model_start_date,
                           )
mf6_df.head()

[5]:
STO-SS_IN STO-SY_IN WEL_IN RCH_IN SFR_IN TOTAL_IN STO-SS_OUT STO-SY_OUT WEL_OUT RCH_OUT SFR_OUT TOTAL_OUT IN-OUT PERCENT_DISCREPANCY kstp kper
1998-04-02 0.000000 0.000000 0.0 358429.78125 1.019368e+06 1377797.250 0.000000 0.000000 0.000000 0.0 1.378546e+06 1378546.000 -748.76062 -0.05 0 0
2007-04-02 6.829200 2415.879150 0.0 358429.78125 1.288051e+06 1648903.875 0.000000 0.000000 500968.875000 0.0 1.147937e+06 1648906.125 -2.27980 -0.00 9 1
2007-10-02 1141.329956 381346.062500 0.0 253336.90625 7.053851e+05 1341209.375 27.621799 10508.920898 527275.625000 0.0 8.033984e+05 1341210.625 -1.22870 -0.00 4 2
2008-04-02 0.000000 0.000000 0.0 456429.18750 1.081024e+06 1537452.750 1518.002197 350718.281250 17584.275391 0.0 1.167628e+06 1537448.625 4.16440 0.00 4 3
2008-10-02 401.908112 112861.390625 0.0 320935.68750 1.216493e+06 1650692.375 44.325199 15359.580078 652556.437500 0.0 9.827312e+05 1650691.500 0.80590 0.00 4 4

Get an advanced stress package budget

  • in this case, for the SFR package

  • this requires a package budget to be written to the listing file (MODFLOW 6)

[6]:

sfr_df = get_listfile_data(listfile=mf6_listfile, model_start_datetime=mf6_model_start_date,
                       budgetkey='SFR BUDGET')
sfr_df.head()

[6]:
GWF_IN RAINFALL_IN EVAPORATION_IN RUNOFF_IN EXT-INFLOW_IN EXT-OUTFLOW_IN STORAGE_IN AUXILIARY_IN TOTAL_IN GWF_OUT ... RUNOFF_OUT EXT-INFLOW_OUT EXT-OUTFLOW_OUT STORAGE_OUT AUXILIARY_OUT TOTAL_OUT IN-OUT PERCENT_DISCREPANCY kstp kper
1998-04-02 1.378638e+06 0.0 0.0 390723.562500 52337480.0 0.0 0.0 0.0 54106840.0 1.019311e+06 ... 0.0 0.0 53087528.0 0.0 0.0 54106840.0 -1.490100e-08 -0.0 0 0
2007-04-02 1.147938e+06 0.0 0.0 213503.109375 56911972.0 0.0 0.0 0.0 58273412.0 1.288051e+06 ... 0.0 0.0 56985364.0 0.0 0.0 58273412.0 1.490100e-08 0.0 9 1
2007-10-02 8.033963e+05 0.0 0.0 238699.078125 19438356.0 0.0 0.0 0.0 20480450.0 7.053850e+05 ... 0.0 0.0 19775066.0 0.0 0.0 20480450.0 0.000000e+00 0.0 4 2
2008-04-02 1.167627e+06 0.0 0.0 227403.312500 52732372.0 0.0 0.0 0.0 54127404.0 1.081026e+06 ... 0.0 0.0 53046380.0 0.0 0.0 54127404.0 2.235200e-08 0.0 4 3
2008-10-02 9.827311e+05 0.0 0.0 386176.125000 51699144.0 0.0 0.0 0.0 53068052.0 1.216493e+06 ... 0.0 0.0 51851560.0 0.0 0.0 53068052.0 -7.450600e-09 -0.0 4 4

5 rows × 22 columns

Basic summary of MODFLOW water balance

[7]:

plot_budget_summary(df, title_prefix='Little Plover example',
                    xtick_stride=1)

[7]:

<Axes: title={'center': 'Little Plover example budget summary'}, ylabel='Flow rate, in model units of $L^3/T$'>
../_images/notebooks_plotting_listing_file_budgets_12_1.png

Plot just the net fluxes for each component

  • add a secondary axis with other units

Note: model_length_units and model_time_units are needed to convert units to the secondary axis units.

[8]:

plot_budget_summary(df, title_prefix='Little Plover example', term_nets=True,
                    model_length_units='feet', model_time_units='time',
                    secondary_axis_units='mgal/day')

[8]:

<Axes: title={'center': 'Little Plover example budget summary (net fluxes)'}, ylabel='Flow rate, in model units of $ft^3/T$'>
../_images/notebooks_plotting_listing_file_budgets_14_1.png

Plot a subset of results

This can be useful for models with many stress periods

[9]:

plot_budget_summary(df, title_prefix='Little Plover example',
                    xtick_stride=2,
                        plot_start_date='2011-05', plot_end_date='2011-09')

[9]:

<Axes: title={'center': 'Little Plover example budget summary'}, ylabel='Flow rate, in model units of $L^3/T$'>
../_images/notebooks_plotting_listing_file_budgets_16_1.png

plot budget sums by calendar year

  • with percentages

[10]:

ax = plot_budget_summary(df, title_prefix='Little Plover example',
                         annual_sums=True, plot_pcts=True)
../_images/notebooks_plotting_listing_file_budgets_18_0.png

plot budget sums for an arbitrary grouping

plot_budget_summary and plot_budget_term can take any DataFrame with column names structured like those output by flopy.utils.MfListBudget (i.e. with _IN or _OUT suffixes), and a datetime index. So pandas groupby (or any other manipulations) can be performed on the data beforehand to achieve the desired result.

In this case, we group the data into growing season vs. non-growing season based on month:

[11]:

df['growing_season'] = 'Non-growing season (Oct - April)'
df.loc[(df.index.month > 5) & (df.index.month < 10), 'growing_season'] = 'Growing season (May - Sept)'
gs = df.groupby('growing_season').mean()
gs

[11]:
STORAGE_IN CONSTANT_HEAD_IN WELLS_IN RECHARGE_IN STREAM_LEAKAGE_IN TOTAL_IN STORAGE_OUT CONSTANT_HEAD_OUT WELLS_OUT RECHARGE_OUT STREAM_LEAKAGE_OUT TOTAL_OUT IN-OUT PERCENT_DISCREPANCY kstp kper
growing_season
Growing season (May - Sept) 625680.937500 757334.25 0.0 1.117286e+06 684.561279 2500986.00 681521.0000 406225.3750 746160.937500 0.0 667186.375 2501093.750 -107.687500 -0.00500 4.0 6.5
Non-growing season (Oct - April) 148805.484375 845780.50 0.0 7.841528e+05 532.971741 1779271.75 611469.8125 360034.9375 110107.578125 0.0 697856.500 1779468.875 -197.078125 -0.01375 4.0 5.0 
[12]:

ax = plot_budget_summary(gs, title_prefix='Little Plover example',
                         plot_pcts=True)
ax.xaxis.set_tick_params(rotation=45)
../_images/notebooks_plotting_listing_file_budgets_21_0.png

This can be done for net fluxes too

[13]:

df['growing_season'] = 'Non-growing season (Oct - April)'
df.loc[(df.index.month > 5) & (df.index.month < 10), 'growing_season'] = 'Growing season (May - Sept)'
gs = df.groupby('growing_season').mean()
ax = plot_budget_summary(gs, title_prefix='Little Plover example',
                         term_nets=True,
                         plot_pcts=True)
ax.xaxis.set_tick_params(rotation=45)
../_images/notebooks_plotting_listing_file_budgets_23_0.png

Plot a budget term

Two plots are produced * absolute values, optionally with secondary axis as above * as a fraction of model or advanced stress package (e.g. SFR) budget

[14]:

plot_budget_term(sfr_df, 'RUNOFF_IN', title_prefix='Shellmound SFR')
../_images/notebooks_plotting_listing_file_budgets_25_0.png

Any column in the listing file budget dataframe (df) can be plotted,

by specifying the first part of the column name (without the _IN or _OUT at the end)

[15]:

df.columns

[15]:

Index(['STORAGE_IN', 'CONSTANT_HEAD_IN', 'WELLS_IN', 'RECHARGE_IN',
       'STREAM_LEAKAGE_IN', 'TOTAL_IN', 'STORAGE_OUT', 'CONSTANT_HEAD_OUT',
       'WELLS_OUT', 'RECHARGE_OUT', 'STREAM_LEAKAGE_OUT', 'TOTAL_OUT',
       'IN-OUT', 'PERCENT_DISCREPANCY', 'kstp', 'kper', 'growing_season'],
      dtype='object')

For example

[16]:

plot_budget_term(df, 'WELLS', title_prefix='Shellmound SFR')
../_images/notebooks_plotting_listing_file_budgets_29_0.png

Plot term by stress period instead of time

Can be useful for models with long spin-up periods that obscure shorter periods of interest when whole simulation time is plotted.

[17]:

plot_budget_term(sfr_df, 'RUNOFF_IN', title_prefix='Shellmound SFR',
                 plot_start_date=None, plot_end_date=None,
                 datetime_xaxis=False)

/home/runner/work/modflow-export/modflow-export/mfexport/listfile.py:670: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator.
  ax2.set_xticklabels(datetime_labels, rotation=90)
../_images/notebooks_plotting_listing_file_budgets_31_1.png

Plot mass balance error

[18]:

plot_budget_term(df, 'PERCENT_DISCREPANCY', title_prefix='Mass Balance',
                 title_suffix='discrepency')
../_images/notebooks_plotting_listing_file_budgets_33_0.png

Macro to plot everything to PDFs

  • budget summary (in/out and net)

  • timeseries of budget terms for each package, and within each advanced stress package

[19]:

plot_list_budget(listfile=mf6_listfile, output_path=output_path,
                 model_start_datetime='1998-04-01')

creating output/pdfs...
creating output/shps...
creating output/rasters...

wrote output/pdfs/listfile_budget_summary.pdf

wrote output/pdfs/listfile_budget_by_term.pdf

[ ]: