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FloPy working stack demo
A short demonstration of core flopy functionality
[1]:
from IPython.display import clear_output, display
import sys
from pathlib import Path
from tempfile import TemporaryDirectory
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
import pandas as pd
proj_root = Path.cwd().parent.parent
# run installed version of flopy or add local path
try:
import flopy
except:
sys.path.append(proj_root)
import flopy
print(sys.version)
print("numpy version: {}".format(np.__version__))
print("matplotlib version: {}".format(mpl.__version__))
print("pandas version: {}".format(pd.__version__))
print("flopy version: {}".format(flopy.__version__))
3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0]
numpy version: 1.24.3
matplotlib version: 3.7.1
pandas version: 2.0.1
flopy version: 3.3.7
Model Inputs
[2]:
# first lets load an existing model
model_ws = proj_root / "examples" / "data" / "freyberg_multilayer_transient"
ml = flopy.modflow.Modflow.load(
"freyberg.nam",
model_ws=model_ws,
verbose=False,
check=False,
exe_name="mfnwt",
)
[3]:
ml.modelgrid
[3]:
xll:622241.1904510253; yll:3343617.741737109; rotation:15.0; crs:EPSG:32614; units:meters; lenuni:2
Let’s looks at some plots
[4]:
ml.upw.plot();
[5]:
ml.dis.plot();
[6]:
ml.drn.plot(key="cond")
ml.drn.plot(key="elev");
First create a temporary workspace.
[7]:
# create a temporary workspace
temp_dir = TemporaryDirectory()
workspace = Path(temp_dir.name)
Write a shapefile of the DIS package.
[8]:
# write the shapefile
ml.dis.export(workspace / "freyberg_dis.shp")
Write a netCDF file with all model inputs.
[9]:
ml.export(workspace / "freyberg.nc")
initialize_geometry::
model crs: EPSG:32614
initialize_geometry::nc_crs = EPSG:4326
transforming coordinates using = proj=pipeline step inv proj=utm zone=14 ellps=WGS84 step proj=unitconvert xy_in=rad xy_out=deg
[9]:
<flopy.export.netcdf.NetCdf at 0x7f316981df60>
Change model directory and external path, modify inputs and write new input files.
[10]:
ml.external_path = workspace / "ref"
ml.model_ws = workspace
ml.write_input()
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Now run the model.
[11]:
ml.run_model(silent=True)
[11]:
(True, [])
Inspecting outputs
First, let’s look at the list file. The list file summarizes the model’s results.
[12]:
mfl = flopy.utils.MfListBudget(model_ws / "freyberg.list")
df_flux, df_vol = mfl.get_dataframes(start_datetime="10-21-2015")
df_flux
[12]:
| STORAGE_IN | CONSTANT_HEAD_IN | WELLS_IN | DRAINS_IN | RECHARGE_IN | TOTAL_IN | STORAGE_OUT | CONSTANT_HEAD_OUT | WELLS_OUT | DRAINS_OUT | RECHARGE_OUT | TOTAL_OUT | IN-OUT | PERCENT_DISCREPANCY | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2015-10-22 | 0.000000 | 0.000000 | 0.0 | 0.0 | 6276.861816 | 6276.861816 | 0.000000 | 2446.318848 | 0.000000 | 3830.650146 | 0.0 | 6276.968750 | -0.106900 | -0.0 |
| 2015-10-23 | 635.447998 | 0.000000 | 0.0 | 0.0 | 6428.198730 | 7063.646484 | 31.594000 | 2430.337891 | 1302.403198 | 3299.415039 | 0.0 | 7063.750000 | -0.103500 | -0.0 |
| 2015-10-24 | 1361.814941 | 0.000000 | 0.0 | 0.0 | 5397.295898 | 6759.110840 | 9.152200 | 2369.628174 | 1618.676392 | 2761.639648 | 0.0 | 6759.096191 | 0.014648 | 0.0 |
| 2015-10-25 | 677.577209 | 0.000000 | 0.0 | 0.0 | 5931.377441 | 6608.954590 | 180.233307 | 2353.585449 | 1498.694702 | 2576.461670 | 0.0 | 6608.975586 | -0.020996 | -0.0 |
| 2015-10-26 | 697.818298 | 0.000000 | 0.0 | 0.0 | 8378.572266 | 9076.390625 | 1051.897461 | 2417.248291 | 3119.501953 | 2487.737305 | 0.0 | 9076.384766 | 0.005859 | 0.0 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 2018-10-18 | 1298.433350 | 23.293699 | 0.0 | 0.0 | 4240.286133 | 5562.013184 | 1606.280396 | 1909.538574 | 1930.483154 | 115.724899 | 0.0 | 5562.026855 | -0.013672 | -0.0 |
| 2018-10-19 | 920.468689 | 25.997499 | 0.0 | 0.0 | 4082.749512 | 5029.215820 | 1659.194702 | 1892.605835 | 1279.166382 | 198.258896 | 0.0 | 5029.225586 | -0.009766 | -0.0 |
| 2018-10-20 | 496.671387 | 20.047001 | 0.0 | 0.0 | 5053.779297 | 5570.497559 | 2428.291016 | 1933.045898 | 794.582886 | 414.594513 | 0.0 | 5570.514648 | -0.017090 | -0.0 |
| 2018-10-21 | 230.320999 | 9.045700 | 0.0 | 0.0 | 6168.920410 | 6408.287109 | 2335.759521 | 2006.124268 | 1373.782593 | 692.638123 | 0.0 | 6408.304688 | -0.017578 | -0.0 |
| 2018-10-22 | 0.000000 | 317.783386 | 0.0 | 0.0 | 5190.390625 | 5508.173828 | 0.000000 | 745.363403 | 4762.799805 | 0.000000 | 0.0 | 5508.163086 | 0.010742 | 0.0 |
1097 rows × 14 columns
[13]:
groups = df_flux.groupby(lambda x: x.split("_")[-1], axis=1).groups
df_flux_in = df_flux.loc[:, groups["IN"]]
df_flux_in.columns = df_flux_in.columns.map(lambda x: x.split("_")[0])
df_flux_out = df_flux.loc[:, groups["OUT"]]
df_flux_out.columns = df_flux_out.columns.map(lambda x: x.split("_")[0])
df_flux_delta = df_flux_in - df_flux_out
df_flux_delta.iloc[-1, :].plot(kind="bar", figsize=(10, 10), grid=True);
Now let’s look at the simulated head.
[14]:
# if you pass the model instance, then the plots will be offset and rotated
h = flopy.utils.HeadFile(model_ws / "freyberg.hds", model=ml)
h.times
[14]:
[1.0,
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[15]:
h.plot(totim=900, contour=True, grid=True, colorbar=True, figsize=(10, 10));
We can write the heads to a shapefile.
[16]:
h.to_shapefile(ml.model_ws / "freyburg_head.shp", verbose=False)
Finally, let’s make an animation of the simulated head over the time domain.
[17]:
f = plt.figure(figsize=(10, 10))
ax = plt.subplot(1, 1, 1, aspect="equal")
for t in h.times[0:-1:10]:
ax.cla()
ax.set_title(f"totim: {t:4.0f} days")
mm = flopy.plot.PlotMapView(model=ml, ax=ax)
mm.plot_array(h.get_data(totim=t), vmin=0, vmax=20)
mm.plot_grid(lw=0.5, color="black")
display(f)
clear_output(wait=True)
plt.pause(0.1);
[18]:
try:
# ignore PermissionError on Windows
temp_dir.cleanup()
except:
pass